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Identification of BAK1 as a novel prognostic biomarker for liver cancer based on the mining of liver cancer pyroptosis-related genes

Yiyang Chen
1
Wanbang Zhou
2
Yiju Gong
2
Xi Ou
1*

1 Anhui Medical University, Clinical College of Peking University Shenzhen Hospital, Fifth Clinical Medical College of Anhui Medical University

2 Peking University Shenzhen Hospital, Futian District, Shenzhen, Guangdong, 518036



Tumor Discovery 2022, 1(2),221; https://doi.org/10.36922/td.v1i2.221
Submitted13 Oct 2022
Revised01 Jan 0001
Accepted15 Nov 2022
Published08 Dec 2022
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Cite This Article
Yiyang Chen ,Wanbang Zhou ,Yiju Gong ,Xi Ou . (2022). <p>Identification of <em>BAK1 </em>as a novel prognostic biomarker for liver cancer based on the mining of liver cancer pyroptosis-related genes</p>. Tumor Discovery , 1(2), tdv1i2221. https://doi.org/10.36922/td.v1i2.221
Abstract

Hepatocellular carcinoma is a type of digestive tract cancer that has a high incidence and a poor prognosis. Pyroptosis, a newly discovered and proven method of pro-inflammatory programmed cell death, is linked to tumor development, patient prognosis, and response to therapy. In this study, the prognostic genes of liver cancer were obtained; their expressions were extracted from The Cancer Genome Atlas database; differential analysis, survival analysis, and clinical correlation analysis were performed; and a nomogram was constructed to predict the survival rate. Based on the expression of BAK1 gene, all samples were then divided into two groups: High expression and low expression. Enrichment analysis, immunological analysis, and drug susceptibility analysis of differential genes were subsequently performed in that order. BAK1 expression was found to be significantly higher in liver hepatocellular carcinoma (LIHC). High BAK1 expression levels were found to be linked to cancer development and poor prognosis. To assess the diagnostic value of BAK1 in LIHC, a receiver operating characteristic curve was drawn. In addition, there were significant differences in drug sensitivity between high and low BAK1 expression in 90 drugs. The BAK1 gene may be a good potential LIHC diagnostic marker, an oncogene in the occurrence and progression of liver cancer, a new prognostic biomarker, and a potential therapeutic target for liver cancer.

REFERENCES

Niu LJ, Huang T, Wang L, et al., 2022, HBX suppresses PTEN to promote the malignant progression of hepatocellular carcinoma through mi-R155 activation. Ann Hepatol., 27(3): 100688.

Liu W, Zheng L, Zhang R, et al., 2022, Circ-ZEB1 promotes PIK3CA expression by silencing miR-199a-3p and affects the proliferation and apoptosis of hepatocellular carcinoma. Mol Cancer, 21(1): 72. https://doi.org/10.1186/s12943-022-01529-5

Muhammed A, D’Alessio A, Enica A, et al., 2022, Predictive biomarkers of response to immune checkpoint inhibitors in hepatocellular carcinoma. Expert Rev Mol Diagn., 22(3): 253–264. https://doi.org/10.1080/14737159.2022.2049244

Xu X, Mao Y, Tang Y, et al., 2022, Classification of hepatocellular carcinoma and intrahepatic cholangiocarcinoma based on radiomic analysis. Comput Math Methods Med., 2022: 5334095. https://doi.org/10.1155/2022/5334095

Niu Z, Xu Y, Li Y, et al., 2022, Construction and validation of a novel pyroptosis-related signature to predict prognosis in patients with cutaneous melanoma. Math Biosci Eng., 19(1): 688–706. https://doi.org/10.3934/mbe.2022031

Liu X, Ding S, Liu P, 2021, The roles of gasdermin D in coronavirus infection and evasion. Front Microbiol., 12: 784009. https://doi.org/10.3389/fmicb.2021.784009

Chu Q, Jiang Y, Zhang W, et al., 2016, Pyroptosis is involved in the pathogenesis of human hepatocellular carcinoma. Oncotarget, 7(51): 84658–84665. https://doi.org/10.18632/oncotarget.12384

Yan W, Chang Y, Liang X, et al., 2012, High-mobility group box 1 activates caspase-1 and promotes hepatocellular carcinoma invasiveness and metastases. Hepatology, 55(6): 1863–1875. https://doi.org/10.1002/hep.25572

Teng JF, Mei QB, Zhou XG, et al., 2020, Polyphyllin VI induces Caspase-1-Mediated pyroptosis via the induction of ROS/NF-kappaB/NLRP3/GSDMD signal axis in non-small cell lung cancer. Cancers (Basel) 12: 193. https://doi.org/10.3390/cancers12010193

Li H, Zhao XK, Cheng YJ, et al., 2019, Gasdermin D-mediated hepatocyte pyroptosis expands inflammatory responses that aggravate acute liver failure by upregulating monocyte chemotactic protein 1/CC chemokine receptor-2 to recruit macrophages. World J Gastroenterol., 25: 6527–6540.https://doi.org/10.3748/wjg.v25.i44.6527

Ye Y, Dai Q, Qi H, 2021, A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer. Cell Death Discov., 7(1): 71. https://doi.org/10.1038/s41420-021-00451-x

Zhang Y, He R, Lei X, et al., 2021, A novel pyroptosis-related signature for predicting prognosis and indicating immune microenvironment features in osteosarcoma. Front Genet., 12: 780780. https://doi.org/10.3389/fgene.2021.780780

Wang FS, Fan JG, Zhang Z, et al., 2014, The global burden of liver disease: The major impact of China. Hepatology, 60: 2099–2108. https://doi.org/10.1002/hep.27406

Perisetti A, Goyal H, Yendala R, et al., 2022, Sarcopenia in hepatocellular carcinoma: Current knowledge and future directions. World J Gastroenterol., 28(4): 432–448. https://doi.org/10.3748/wjg.v28.i4.432

Qu D, Wang Y, Xia Q, et al., 2022, Intratumoral microbiome of human primary liver cancer. Hepatol Commun., 6(7): 1741–1752. https://doi.org/10.1002/hep4.1908

Tsuchiya K, 2021, Switching from apoptosis to pyroptosis: Gasdermin-elicited inflammation and antitumor immunity. Int J Mol Sci., 22(1): 426. https://doi.org/10.3390/ijms22010426

Shimizu S, Narita M, Tsujimoto Y, 1999, Bcl-2 family proteins regulate the release of apoptogenic cytochrome c by the mitochondrial channel VDAC. Nature, 399(6735): 483–487. https://doi.org/10.1038/20959

Chittenden T, Harrington EA, O’Connor R, et al., 1995, Induction of apoptosis by the Bcl-2 homologue Bak. Nature, 374(6524): 733–736. https://doi.org/10.1038/374733a0

Liu Z, Zhang K, Zhao Z, et al., 2022, Prognosis-related autophagy genes in female lung adenocarcinoma. Medicine, 101(1): e28500. https://doi.org/10.1097/MD.0000000000028500

Feng J, 2022, The p53 pathway related genes predict the prognosis of colon cancer. Int J Gen Med., 15: 169–177. https://doi.org/10.2147/IJGM.S346280

Wang H, Huang H, Wang L, et al., 2021, Cancer-associated fibroblasts secreted miR-103a-3p suppresses apoptosis and promotes cisplatin resistance in non-small cell lung cancer. Aging (Albany NY), 13(10): 14456–14468. https://doi.org/10.18632/aging.103556

Witek ?, Janikowski T, Gabriel I, et al., 2021, Analysis of microRNA regulating cell cycle-related tumor suppressor genes in endometrial cancer patients. Hum Cell, 34(2): 564– 569. https://doi.org/10.1007/s13577-020-00451-6

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